Blar i NTNU Open på forfatter "Ali, Omer"
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abc4pwm: affinity based clustering for position weight matrices in applications of DNA sequence analysis
Ali, Omer; Farooq, Amna; Yang, Mingyi; Jin, Victor X.; Bjørås, Magnar; Wang, Junbai (Peer reviewed; Journal article, 2022)Background Transcription factor (TF) binding motifs are identified by high throughput sequencing technologies as means to capture Protein-DNA interactions. These motifs are often represented by consensus sequences in form ... -
Identifying functional regulatory mutation blocks by integrating genome sequencing and transcriptome data
Yang, Mingyi; Ali, Omer; Bjørås, Magnar; Wang, Junbai (Peer reviewed; Journal article, 2023)Millions of single nucleotide variants (SNVs) exist in the human genome; however, it remains challenging to identify functional SNVs associated with diseases. We propose a non-encoding SNVs analysis tool bpb3, BayesPI-BAR ...